GDSCTools
master
  • 1. Installation
  • 2. Quick Start
  • 3. Data Format and Readers
  • 4. ANOVA analysis (introduction)
  • 5. The ANOVA analysis in details
  • 6. HTML report
  • 7. Data Packages
  • 8. OmniBEM Builder
  • 9. Regression analysis
  • 10. Notebooks
  • 11. Standalone application
  • 12. Gallery / Examples
    • 12.1. Histogram of the IC50 from v17 data set
    • 12.2. Visualise genomic features
    • 12.3. Analyse all associations (drug/feature)
    • 12.4. Association between a Drug and a Feature
    • 12.5. Tuning alpha (elastic net case)
    • 12.6. Plot weights resulting from an Elastic Net analysis
    • 12.7. Use Omnibem to filter annotation data
  • 13. Reproducibility
  • 14. References
  • 15. For developers
  • ChangeLog
  • FAQS
  • Glossary
GDSCTools
  • Docs »
  • 12. Gallery / Examples
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12. Gallery / ExamplesΒΆ

General-purpose examples for GDSCTools library.

../_images/sphx_glr_plot_ic50_hist_thumb.png

Histogram of the IC50 from v17 data set

../_images/sphx_glr_plot_ic50_thumb.png

Visualise genomic features

../_images/sphx_glr_plot_volcano_thumb.png

Analyse all associations (drug/feature)

../_images/sphx_glr_plot_association_thumb.png

Association between a Drug and a Feature

../_images/sphx_glr_plot_elastic_tuning_thumb.png

Tuning alpha (elastic net case)

../_images/sphx_glr_plot_elastic_weights_thumb.png

Plot weights resulting from an Elastic Net analysis

../_images/sphx_glr_plot_omnibem_thumb.png

Use Omnibem to filter annotation data

Download all examples in Python source code: auto_examples_python.zip
Download all examples in Jupyter notebooks: auto_examples_jupyter.zip

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